[1]Chao Wang, Yi Wei, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu*，Constructing effective energy functions for protein structure prediction through broadening attraction-basin and reverse Monte Carlo sampling， BMC Bioinformatics, 2019 通讯作者 [2]Jianwei Zhu, Sheng Wang, Dongbo Bu*, Jinbo Xu*，Protein threading using residue co-variation and deep learning， Bioinformatics, 2018, 34(13): i263~273 通讯作者 [3]Jianwei Zhu, Haicang Zhang, Shuai Cheng Li, Chao Wang, Lupeng Kong, Shiwei Sun, Wei-Mou Zheng, Dongbo Bu*，Improving protein fold recognition by extracting fold-specific features from predicted residue–residue contacts， Bioinformatics, 2017 Dec, 33(53): 3749~3753 通讯作者 [4]Hong Liu#, Maozhen Han#, Shuai Cheng Li, Guangming Tan, Shiwei Sun, Zhiqiang Hu, Pengshuo Yang Rui Wang, Yawen Liu, Feng Chen, Jianjun Peng, Hong Peng Hongxing Song, Yang Xia, Liqun Chu, Quan Zhou, Feng Guan, Jing Wu, Dongbo Bu*, Kang Ning*. Resilience of human gut microbial communities for the long stay with multiple dietary shifts, Gut 2018, DOI: 10.1136/gutjnl-2018-317298. 通讯作者 [5]Shiwei Sun#, Chuncui Huang#, Yaojun Wang#, Yaming Liu, Jingwei Zhang, Jinyu Zhou, Feng Gao, Fei Yang, Runsheng, Chen, Barbara, Mulloy, Wengang Chai*, Yan Li*, Dongbo Bu*. Toward automated identification of glycan branching patterns using multistage mass spectrometry with intelligent precursor selection [J]. Analytical Chemistry, 2018, 90, 14412-14422. 通讯作者

[1] 国家自然科学基金面上，31770775，蛋白质残基间相互作用预测算法研究及其在三级结构预测中的应用,60万，主持

[2] 国家自然科学基金面上，61272318，蛋白质结构模体识别及结构预测算法研究，2012/01-2016/12，80万，主持 

[3] 国家自然科学基金青年基金，30800168，基于随机图的蛋白质三级结构预测研究，2008/01-2012/12，20万，主持